Draft: automatically run july 2023 campaign (MR !11)

• docu:
  • *_aeris_ds variables, functions, files refer to processing data from aeris as direct source, i.e., not "aeris -> data-logger -> data" but "aeris -> data"
  • this is needed specifically for mc 202209 (& 202307)
    • because of connection problems between aeris and data logger, the data are used from aeris output files

Closes #4

preprocessing/additional_info/correction_filter_co2.txt

@@ -31,7 +31,7 @@ if (!dir.exists(warningDir)){
 
 # CO2 data parameter for correction/filter functions
 ## function 01
-minLengthMPSec <- 120  # [seconds]
+minLengthMPSec <- 60  # [seconds]
 maxLengthMPSec <- 600  # [seconds]
 
 ## function 02
@@ -40,8 +40,12 @@ removeAdditionalAtStartForDarkSec <- 8    # [seconds] additional data removed fo
 startRemoveDataDarkSec            <- startRemoveDataLightSec + removeAdditionalAtStartForDarkSec
 endRemoveDataSec                  <- 0    # [seconds] is ignored if l_cutMP_AbsoluteTime == "T"
 l_cutMP_AbsoluteTime              <- "T"  # [T,F]     cut mp after x seconds from mp start
-cutMP_AbsoluteTimeSec             <- 188  # [seconds] remove all data after this time if l_cutMP_AbsoluteTime == "T"
-                                          # e. g., 3 min = 180 sec + 8 (remove 8 data points from start) = 188
+cutMP_AbsoluteTimeSec             <- 228  # [seconds] remove all data after this time if l_cutMP_AbsoluteTime == "T"
+                                          # 3.5 min (Johannesson et al. 2024, https://doi.org/10.1016/j.agrformet.2024.110289) = 210 + 18 = 228 sec
+                                          # (18 because we remove 10 (light) or 18 (dark) seconds in our filtering)
+                                          # e. g., 3 min = 180 sec + 18 sec = 198 
+                                          # 2 min = 120 sec + 18 sec = 138 
+                                          # 1 min = 60 sec + 18 sec = 78 
 
 ## function 03
 minDiffFlatLine_mp  <- 2.0     # min difference between first and last values of mp [ppm] <- test for "flat line"